STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF82836.1Transcriptional regulator, TetR family. (222 aa)    
Predicted Functional Partners:
SHF82781.1
ABC-2 type transport system permease protein.
 
  
 0.937
SHF82809.1
ABC-2 type transport system ATP-binding protein.
 
     0.800
SHG75884.1
Helix-turn-helix domain-containing protein.
  
     0.673
SHG34838.1
Predicted O-methyltransferase YrrM.
     
 0.559
SHF82862.1
Reductase C-terminal.
       0.509
SHH09466.1
HNH endonuclease.
  
     0.493
SHG75574.1
Major Facilitator Superfamily protein.
  
     0.484
SHG80824.1
Cupin domain-containing protein.
  
     0.454
SHG13049.1
DNA-binding transcriptional regulator GbsR, MarR family.
  
     0.441
SHG24467.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.427
Your Current Organism:
Streptoalloteichus hindustanus
NCBI taxonomy Id: 2017
Other names: ATCC 31217, DSM 44523, IFO 15115, JCM 3268, NBRC 15115, NRRL B-11280, S. hindustanus, Streptalloteichus hindustanensis, Streptalloteichus hindustanus, Streptoalloteichus hindustanensis, VKM Ac-683, strain C677-91
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