STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF84314.1Lsr2 protein. (146 aa)    
Predicted Functional Partners:
SHF41116.1
Protein of unknown function.
  
     0.671
SHE49493.1
Sugar phosphate isomerase/epimerase.
  
     0.664
SHG46883.1
Protein of unknown function.
  
     0.629
SHG05227.1
Cobalamin-independent synthase, Catalytic domain.
  
     0.541
SHG91258.1
Hypothetical protein.
  
   
 0.534
SHF84339.1
Hypothetical protein.
       0.527
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   
 0.504
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
   
 0.500
SHE80158.1
Protein of unknown function.
  
     0.480
SHG90766.1
Protein of unknown function.
  
     0.475
Your Current Organism:
Streptoalloteichus hindustanus
NCBI taxonomy Id: 2017
Other names: ATCC 31217, DSM 44523, IFO 15115, JCM 3268, NBRC 15115, NRRL B-11280, S. hindustanus, Streptalloteichus hindustanensis, Streptalloteichus hindustanus, Streptoalloteichus hindustanensis, VKM Ac-683, strain C677-91
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