STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF88839.1DNA binding domain-containing protein, excisionase family. (141 aa)    
Predicted Functional Partners:
SHF64517.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
     0.607
SHF35282.1
Helix-turn-helix domain-containing protein.
  
     0.522
SHF88812.1
Hypothetical protein.
       0.503
SHF64006.1
Protein of unknown function.
  
     0.448
SHF05280.1
2-Methylisocitrate lyase, PEP mutase family.
  
     0.411
SHE62072.1
Hypothetical protein.
  
     0.408
SHG67823.1
Predicted arabinose efflux permease, MFS family.
  
     0.405
Your Current Organism:
Streptoalloteichus hindustanus
NCBI taxonomy Id: 2017
Other names: ATCC 31217, DSM 44523, IFO 15115, JCM 3268, NBRC 15115, NRRL B-11280, S. hindustanus, Streptalloteichus hindustanensis, Streptalloteichus hindustanus, Streptoalloteichus hindustanensis, VKM Ac-683, strain C677-91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.