STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG12964.1Protein of unknown function. (176 aa)    
Predicted Functional Partners:
SHG12937.1
Protein of unknown function.
 
    
0.795
SHE65070.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.772
SHE42797.1
Type VII secretion protein EccE.
  
     0.768
SHE42842.1
Hypothetical protein.
  
     0.763
SHE57828.1
Hypothetical protein.
  
     0.762
SHG05325.1
Hypothetical protein.
  
     0.762
SHG08551.1
Hypothetical protein.
  
     0.754
SHG14629.1
RES domain-containing protein.
  
     0.749
SHE75833.1
SGNH hydrolase-like domain-containing protein, acetyltransferase AlgX.
  
     0.730
SHE42584.1
Type VII secretion integral membrane protein EccD.
  
     0.729
Your Current Organism:
Streptoalloteichus hindustanus
NCBI taxonomy Id: 2017
Other names: ATCC 31217, DSM 44523, IFO 15115, JCM 3268, NBRC 15115, NRRL B-11280, S. hindustanus, Streptalloteichus hindustanensis, Streptalloteichus hindustanus, Streptoalloteichus hindustanensis, VKM Ac-683, strain C677-91
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