STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG46883.1Protein of unknown function. (119 aa)    
Predicted Functional Partners:
SHG46922.1
Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain.
 
     0.790
SHF41116.1
Protein of unknown function.
  
     0.733
SHG70332.1
Lsr2 protein.
  
     0.671
SHE74789.1
Lsr2 protein.
  
     0.664
SHG46843.1
Phosphomannomutase.
       0.642
SHF84314.1
Lsr2 protein.
  
     0.629
SHF33454.1
YggT family protein.
  
     0.623
SHG46769.1
Phospho-glucose isomerase C-terminal SIS domain-containing protein.
       0.621
SHG46805.1
Hypothetical protein; Belongs to the UPF0434 family.
       0.621
whiB-5
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
 
    0.593
Your Current Organism:
Streptoalloteichus hindustanus
NCBI taxonomy Id: 2017
Other names: ATCC 31217, DSM 44523, IFO 15115, JCM 3268, NBRC 15115, NRRL B-11280, S. hindustanus, Streptalloteichus hindustanensis, Streptalloteichus hindustanus, Streptoalloteichus hindustanensis, VKM Ac-683, strain C677-91
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