STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG73678.1Hypothetical protein. (499 aa)    
Predicted Functional Partners:
SHG73643.1
Hypothetical protein.
 
   
 0.978
SHG73773.1
TraM recognition site of TraD and TraG.
 
  
 0.943
SHG73612.1
Hypothetical protein.
     
 0.881
SHG73583.1
Hypothetical protein.
       0.818
SHG73518.1
Hypothetical protein.
       0.808
SHG73901.1
Conjugative relaxase domain-containing protein, TrwC/TraI family.
 
   
 0.790
SHG73549.1
Hypothetical protein.
       0.773
SHE73059.1
Pilus assembly protein CpaF.
    
 0.645
SHG73741.1
Cell wall-associated hydrolase, NlpC family.
  
    0.605
rplS
Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
    
   0.568
Your Current Organism:
Streptoalloteichus hindustanus
NCBI taxonomy Id: 2017
Other names: ATCC 31217, DSM 44523, IFO 15115, JCM 3268, NBRC 15115, NRRL B-11280, S. hindustanus, Streptalloteichus hindustanensis, Streptalloteichus hindustanus, Streptoalloteichus hindustanensis, VKM Ac-683, strain C677-91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.