STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF70490.1Protein of unknown function. (88 aa)    
Predicted Functional Partners:
SFF70477.1
Hypothetical protein.
       0.752
SFF98845.1
Hypothetical protein.
  
     0.712
SFF75910.1
Sporulation protein YpjB.
  
     0.691
SFF78742.1
Uncharacterized beta-barrel protein YwiB, DUF1934 family.
  
     0.682
SFF90878.1
Stage VI sporulation protein D.
  
     0.659
SFF66103.1
Hypothetical protein.
  
     0.658
SFF91119.1
Hypothetical protein.
  
     0.653
SFF67164.1
Hypothetical protein.
  
    0.649
SFF66032.1
Hypothetical protein.
  
     0.627
SFF86709.1
Replicative DNA helicase loader DnaB.
  
     0.620
Your Current Organism:
Planifilum fulgidum
NCBI taxonomy Id: 201973
Other names: ATCC BAA-970, DSM 44945, JCM 12508, P. fulgidum, Planifilum fulgidum Hatayama et al. 2005, Planifilum fulgidus, Thermoactinomyces sp. 500275, Thermoactinomyces sp. 700375, Thermoactinomyces sp. C0170, strain 500275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.