STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF74682.1Sporulation protein YtfJ. (149 aa)    
Predicted Functional Partners:
SFF74669.1
Protein of unknown function.
 
    0.946
SFG50796.1
Sporulation protein YunB.
  
   
 0.780
SFF80390.1
Putative DeoR family transcriptional regulator, stage III sporulation protein D.
  
  
 0.763
SFF79673.1
Stage II sporulation protein R.
  
     0.755
SFF73485.1
Stage III sporulation protein AC.
  
     0.753
SFG46186.1
Stage II sporulation protein GA (sporulation sigma-E factor processing peptidase); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR.
  
     0.752
SFG35442.1
Sporulation integral membrane protein YlbJ.
  
    0.749
SFF73510.1
Stage III sporulation protein AE.
  
     0.743
SFF73497.1
Stage III sporulation protein AD.
  
     0.736
SFG07623.1
Spore germination protein KC.
  
     0.732
Your Current Organism:
Planifilum fulgidum
NCBI taxonomy Id: 201973
Other names: ATCC BAA-970, DSM 44945, JCM 12508, P. fulgidum, Planifilum fulgidum Hatayama et al. 2005, Planifilum fulgidus, Thermoactinomyces sp. 500275, Thermoactinomyces sp. 700375, Thermoactinomyces sp. C0170, strain 500275
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