STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF90878.1Stage VI sporulation protein D. (445 aa)    
Predicted Functional Partners:
SFF90895.1
Spore coat protein YsxE.
 
  
 0.970
SFG14379.1
Spore coat protein E.
  
 
 0.898
SFF91224.1
Outer spore coat protein E (CotE).
  
 
 0.861
SFF83831.1
Spore germination protein Q.
  
  
 0.856
SFF91119.1
Hypothetical protein.
 
  
 0.804
SFF91559.1
LysM domain-containing protein.
  
 
 
 0.787
SFG32719.1
Protein YqhG of unknown function.
  
     0.771
SFG04422.1
Outer membrane lipoprotein-sorting protein.
  
    0.767
SFF75910.1
Sporulation protein YpjB.
  
     0.762
SFG56397.1
Prespore-specific regulator.
  
     0.761
Your Current Organism:
Planifilum fulgidum
NCBI taxonomy Id: 201973
Other names: ATCC BAA-970, DSM 44945, JCM 12508, P. fulgidum, Planifilum fulgidum Hatayama et al. 2005, Planifilum fulgidus, Thermoactinomyces sp. 500275, Thermoactinomyces sp. 700375, Thermoactinomyces sp. C0170, strain 500275
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