STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF95749.1YwiC-like protein. (245 aa)    
Predicted Functional Partners:
SFG19100.1
Inhibitor of sigma-G Gin.
  
     0.701
SFF95731.1
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
 
    0.693
SFF95793.1
Radical SAM protein, BA_1875 family.
 
     0.671
SFG06384.1
Protein of unknown function.
  
     0.571
SFF98572.1
YheC/D like ATP-grasp.
  
     0.554
SFF91224.1
Outer spore coat protein E (CotE).
  
     0.511
SFF98612.1
YheC/D like ATP-grasp.
  
     0.493
SFF74880.1
Hypothetical protein.
  
     0.479
SFF98551.1
YheC/D like ATP-grasp.
  
     0.470
SFF98592.1
YheC/D like ATP-grasp.
  
     0.462
Your Current Organism:
Planifilum fulgidum
NCBI taxonomy Id: 201973
Other names: ATCC BAA-970, DSM 44945, JCM 12508, P. fulgidum, Planifilum fulgidum Hatayama et al. 2005, Planifilum fulgidus, Thermoactinomyces sp. 500275, Thermoactinomyces sp. 700375, Thermoactinomyces sp. C0170, strain 500275
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