STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG21641.1Predicted arabinose efflux permease, MFS family. (423 aa)    
Predicted Functional Partners:
SFG21668.1
Hypothetical protein.
       0.773
SFF63316.1
Hypothetical protein.
  
     0.662
SFF63209.1
Hypothetical protein.
  
     0.642
SFF69882.1
DNA-binding transcriptional regulator, ArsR family.
  
     0.566
SFF71977.1
Transcriptional regulator, TetR family.
  
     0.552
SFF72008.1
Hypothetical protein.
  
     0.532
SFG21619.1
Hypothetical protein.
       0.522
SFF71994.1
Hypothetical protein.
  
     0.480
SFG17303.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.473
SFG28284.1
Hypothetical protein.
  
     0.469
Your Current Organism:
Planifilum fulgidum
NCBI taxonomy Id: 201973
Other names: ATCC BAA-970, DSM 44945, JCM 12508, P. fulgidum, Planifilum fulgidum Hatayama et al. 2005, Planifilum fulgidus, Thermoactinomyces sp. 500275, Thermoactinomyces sp. 700375, Thermoactinomyces sp. C0170, strain 500275
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