STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CR66_03315DNA recombination protein RecN; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)    
Predicted Functional Partners:
pnk
Inorganic polyphosphate kinase; Catalyzes the phosphorylation of NAD to NADP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.841
CR66_05755
Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.757
CR66_03330
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
CR66_03320
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.575
CR66_03325
Hydrolase TatD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.575
aspS
aspartate--tRNA ligase; Catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.552
CR66_03335
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
hisB
Imidazoleglycerol-phosphate dehydratase; Catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
CR66_03345
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
CR66_03350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
Your Current Organism:
Campylobacter mucosalis
NCBI taxonomy Id: 202
Other names: ATCC 43264, C. mucosalis, CCUG 6822, CIP 103750, Campylobacter sputorum mucosalis, Campylobacter sputorum subsp. mucosalis, DSM 21682, NCTC 11000, strain FS253/72
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