Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CR66_0785550S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)    
Predicted Functional Partners:
CR66_07860
50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
CR66_07870
50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
CR66_07890
50S ribosomal protein L16; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
CR66_07915
50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
CR66_07850
30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
CR66_07865
50S ribosomal protein L23; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
CR66_07875
30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
CR66_07880
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
CR66_07895
50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
CR66_07905
50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
Your Current Organism:
Campylobacter mucosalis
NCBI taxonomy Id: 202
Other names: ATCC 43264, C. mucosalis, CCUG 6822, CIP 103750, Campylobacter sputorum mucosalis, Campylobacter sputorum subsp. mucosalis, DSM 21682, NCTC 11000, strain FS253/72
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