Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIS61361.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)    
Predicted Functional Partners:
AIS61359.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.836
AIS61362.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.803
AIS61358.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.799
AIS61360.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
AIS61357.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.629
AIS61355.1
Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.536
AIS61353.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.481
AIS61354.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.459
AIS61356.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.445
Your Current Organism:
Listeria ivanovii
NCBI taxonomy Id: 202752
Other names: ATCC 49954, CCUG 36672, CIP 103466, CLIP 12229, DSM 12491, L. ivanovii subsp. londoniensis, Listeria ivanovii subsp. londoniensis, NCTC 12701
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