Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIS61556.1PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)    
Predicted Functional Partners:
AIS61557.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.988
AIS64018.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.946
AIS62606.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.943
AIS63306.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.927
AIS63564.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.899
AIS63174.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.892
AIS63644.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.872
AIS62972.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.844
AIS62049.1
Biphenyl 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.829
AIS61950.1
Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.822
Your Current Organism:
Listeria ivanovii
NCBI taxonomy Id: 202752
Other names: ATCC 49954, CCUG 36672, CIP 103466, CLIP 12229, DSM 12491, L. ivanovii subsp. londoniensis, Listeria ivanovii subsp. londoniensis, NCTC 12701
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