Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIS61652.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)    
Predicted Functional Partners:
AIS61653.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.755
AIS63720.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
AIS61651.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.581
AIS61650.1
Inorganic phosphate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.552
AIS62200.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
AIS62201.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.483
AIS61274.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.428
AIS62221.1
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.417
AIS62708.1
Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
     0.415
AIS63492.1
PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.411
Your Current Organism:
Listeria ivanovii
NCBI taxonomy Id: 202752
Other names: ATCC 49954, CCUG 36672, CIP 103466, CLIP 12229, DSM 12491, L. ivanovii subsp. londoniensis, Listeria ivanovii subsp. londoniensis, NCTC 12701
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