Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
AIS61706.1CRISPR-associated protein Cst1; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)    
Predicted Functional Partners:
AIS61707.1
CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.962
AIS61708.1
CRISPR-associated protein Cas5; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.962
AIS61705.1
CRISPR-associated protein Cas6; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.958
AIS61709.1
CRISPR-associated protein Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.933
AIS61710.1
CRISPR-associated exonuclease Cas4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.921
AIS61711.1
CRISPR-associated protein Cas2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.917
AIS63980.1
CRISPR-associated protein Cas1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.915
Your Current Organism:
Listeria ivanovii
NCBI taxonomy Id: 202752
Other names: ATCC 49954, CCUG 36672, CIP 103466, CLIP 12229, DSM 12491, L. ivanovii subsp. londoniensis, Listeria ivanovii subsp. londoniensis, NCTC 12701
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