Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AIS61936.1Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)    
Predicted Functional Partners:
AIS61939.1
Flagellar biosynthesis protein FliR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.867
AIS61937.1
Flagellar biosynthesis protein flip; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.842
AIS61938.1
Flagellar biosynthesis protein FliQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.790
AIS61940.1
Flagellar biosynthesis protein FlhB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.729
AIS61954.1
Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.613
AIS61941.1
Flagellar biosynthesis protein FlhA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.581
AIS61943.1
Flagellar basal body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.
  
    0.553
AIS61942.1
Positive regulator of class III flagellar genes; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.531
AIS61944.1
Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.472
AIS61945.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.454
Your Current Organism:
Listeria ivanovii
NCBI taxonomy Id: 202752
Other names: ATCC 49954, CCUG 36672, CIP 103466, CLIP 12229, DSM 12491, L. ivanovii subsp. londoniensis, Listeria ivanovii subsp. londoniensis, NCTC 12701
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