Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIS62847.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (82 aa)    
Predicted Functional Partners:
AIS63369.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.797
AIS62846.1
Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.663
AIS63576.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.658
AIS62848.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.527
AIS63291.1
Copper resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.461
AIS61464.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.458
AIS62497.1
TPR repeat-containing protein ysoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.452
AIS63987.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.449
AIS62149.1
RNA polymerase sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
   0.449
AIS62174.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.432
Your Current Organism:
Listeria ivanovii
NCBI taxonomy Id: 202752
Other names: ATCC 49954, CCUG 36672, CIP 103466, CLIP 12229, DSM 12491, L. ivanovii subsp. londoniensis, Listeria ivanovii subsp. londoniensis, NCTC 12701
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