Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIS63082.1Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (494 aa)    
Predicted Functional Partners:
AIS62088.1
Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.777
AIS63081.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.716
AIS63148.1
TPR repeat-containing protein ypiA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.690
AIS62222.1
TPR domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.665
AIS63622.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.665
AIS63646.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.634
pheT
phenylalanyl-tRNA synthase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.591
AIS63648.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.586
AIS63083.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.548
AIS63649.1
Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.510
Your Current Organism:
Listeria ivanovii
NCBI taxonomy Id: 202752
Other names: ATCC 49954, CCUG 36672, CIP 103466, CLIP 12229, DSM 12491, L. ivanovii subsp. londoniensis, Listeria ivanovii subsp. londoniensis, NCTC 12701
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