Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
AIS63093.1Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)    
Predicted Functional Partners:
AIS63092.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.973
AIS63088.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0346 family.
 
  
 0.867
AIS63094.1
DegV domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.776
AIS63961.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.673
msrA
Methionine sulfoxide reductase A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.650
msrB
Methionine sulfoxide reductase B; This stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.642
AIS61288.1
Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.640
AIS61415.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.614
AIS61900.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.614
AIS62288.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.611
Your Current Organism:
Listeria ivanovii
NCBI taxonomy Id: 202752
Other names: ATCC 49954, CCUG 36672, CIP 103466, CLIP 12229, DSM 12491, L. ivanovii subsp. londoniensis, Listeria ivanovii subsp. londoniensis, NCTC 12701
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