Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIS63147.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0302 family. (180 aa)    
Predicted Functional Partners:
AIS63148.1
TPR repeat-containing protein ypiA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.883
AIS63146.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.746
AIS62563.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.719
AIS62725.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.708
AIS62564.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.673
AIS63670.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
AIS63138.1
Nucleotide pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.615
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
       0.611
AIS62572.1
Competence protein ComGF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.605
ftsL
Cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family.
  
     0.605
Your Current Organism:
Listeria ivanovii
NCBI taxonomy Id: 202752
Other names: ATCC 49954, CCUG 36672, CIP 103466, CLIP 12229, DSM 12491, L. ivanovii subsp. londoniensis, Listeria ivanovii subsp. londoniensis, NCTC 12701
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