Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIS63502.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)    
Predicted Functional Partners:
AIS63501.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.813
AIS62004.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.692
AIS61830.1
Membrane protein insertase YidC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.623
AIS62870.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.554
AIS63858.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.551
AIS61796.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.535
AIS61632.1
Low temperature requirement protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
AIS63500.1
Sodium:proton antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
       0.508
AIS61622.1
Low temperature requirement protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
AIS63923.1
Aminobenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.499
Your Current Organism:
Listeria ivanovii
NCBI taxonomy Id: 202752
Other names: ATCC 49954, CCUG 36672, CIP 103466, CLIP 12229, DSM 12491, L. ivanovii subsp. londoniensis, Listeria ivanovii subsp. londoniensis, NCTC 12701
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