Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIS63656.1Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)    
Predicted Functional Partners:
AIS63655.1
Competence protein ComFC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.975
AIS62575.1
Competence protein ComG; Required for transformation and DNA binding.
 
  
 0.953
AIS62576.1
General secretion pathway protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.918
AIS64017.1
Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.917
AIS62781.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.782
AIS62505.1
Smf family DNA processing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.775
AIS62573.1
Competence protein ComG; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.764
AIS61298.1
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.725
AIS62731.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0473 family.
  
     0.711
AIS63416.1
CoiA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.709
Your Current Organism:
Listeria ivanovii
NCBI taxonomy Id: 202752
Other names: ATCC 49954, CCUG 36672, CIP 103466, CLIP 12229, DSM 12491, L. ivanovii subsp. londoniensis, Listeria ivanovii subsp. londoniensis, NCTC 12701
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