Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIS63728.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)    
Predicted Functional Partners:
AIS63727.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.
  
  
 0.557
AIS63588.1
Internalin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.488
AIS61537.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.483
plcB
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.453
AIS61254.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.429
AIS61438.1
Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.427
AIS63895.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.425
AIS61850.1
Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.424
AIS63817.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.418
Your Current Organism:
Listeria ivanovii
NCBI taxonomy Id: 202752
Other names: ATCC 49954, CCUG 36672, CIP 103466, CLIP 12229, DSM 12491, L. ivanovii subsp. londoniensis, Listeria ivanovii subsp. londoniensis, NCTC 12701
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