STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
whiB-3Unannotated protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (85 aa)    
Predicted Functional Partners:
sigA
Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.909
K9EFW0_9ACTO
Unannotated protein.
  
     0.770
K9EFF6_9ACTO
Unannotated protein.
  
     0.768
K9ECT3_9ACTO
Unannotated protein.
  
     0.766
K9EBF4_9ACTO
Unannotated protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.762
rpoZ
Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.742
nucS
Unannotated protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
  
     0.680
K9EGJ3_9ACTO
Unannotated protein.
  
     0.650
K9EE01_9ACTO
Unannotated protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
     0.603
K9EYB8_9ACTO
Unannotated protein.
  
     0.598
Your Current Organism:
Actinobaculum massiliense
NCBI taxonomy Id: 202789
Other names: A. massiliense, Actinobaculum massiliae, Actinobaculum massiliense corrig. Greub and Raoult 2006, CSUR P1982, DSM 100580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.