STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioC_4malonyl-CoA O-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)    
Predicted Functional Partners:
ACEE_01990
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.990
bioD_3
ATP-dependent dethiobiotin synthetase BioD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.943
bioF_1
8-amino-7-oxononanoate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.931
bioA_4
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.920
fabB_2
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
  0.900
ACEE_02005
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
bioD_5
Dethiobiotin synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.609
ACEE_02010
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.508
prmB
50S ribosomal protein L30; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
       0.485
Your Current Organism:
Actinobacillus equuli
NCBI taxonomy Id: 202947
Other names: A. equuli subsp. equuli, Actinobacillus equuli subsp. equuli
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