Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACEE_08080Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2035 aa)    
Predicted Functional Partners:
prn
Pertactin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.757
wecF_1
4-alpha-L-fucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.574
ACEE_09185
Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
ACEE_06970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.498
ACEE_00465
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.491
ACEE_10790
Wzz; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.480
ACEE_08490
Ter macrodomain organizer matS-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.459
ompB
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.449
shlB_1
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.448
ycdY_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.448
Your Current Organism:
Actinobacillus equuli
NCBI taxonomy Id: 202947
Other names: A. equuli subsp. equuli, Actinobacillus equuli subsp. equuli
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