Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
ACEE_09255Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)    
Predicted Functional Partners:
ACEE_09250
Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.978
ACEE_06050
Colicin V synthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.846
ACEE_06465
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.798
apxIB
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.791
macB_1
Macrolide transporter; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
  
 0.785
hlyA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.767
lktA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.759
ACEE_09245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.757
cya
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   
 0.755
ACEE_09240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.707
Your Current Organism:
Actinobacillus equuli
NCBI taxonomy Id: 202947
Other names: A. equuli subsp. equuli, Actinobacillus equuli subsp. equuli
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