dlgD_2 protein (Actinobacillus equuli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dlgD_2

2,3-diketo-L-gulonate reductase; NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family. (332 aa)

Predicted Functional Partners:

xylB1_1

0.932

yiaM

0.706

siaT_4

0.697

ACEE_10330

0.668

ACEE_10315

0.594

ACEE_10310

0.560

ydeN

0.471

Your Current Organism:

Actinobacillus equuli

NCBI taxonomy Id: 202947
Other names: A. equuli subsp. equuli, Actinobacillus equuli subsp. equuli

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACEE_10310	ACEE_10315	ACEE_10310	ACEE_10315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
ACEE_10310	dlgD_2	ACEE_10310	ACEE_10335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,3-diketo-L-gulonate reductase; NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.	0.560
ACEE_10310	siaT_4	ACEE_10310	ACEE_10320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
ACEE_10310	xylB1_1	ACEE_10310	ACEE_10305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
ACEE_10310	yiaM	ACEE_10310	ACEE_10325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
ACEE_10315	ACEE_10310	ACEE_10315	ACEE_10310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
ACEE_10315	dlgD_2	ACEE_10315	ACEE_10335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,3-diketo-L-gulonate reductase; NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.	0.594
ACEE_10315	siaT_4	ACEE_10315	ACEE_10320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
ACEE_10315	yiaM	ACEE_10315	ACEE_10325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
ACEE_10330	dlgD_2	ACEE_10330	ACEE_10335	EbgC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,3-diketo-L-gulonate reductase; NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.	0.668
ACEE_10330	siaT_4	ACEE_10330	ACEE_10320	EbgC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
ACEE_10330	yiaM	ACEE_10330	ACEE_10325	EbgC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
dlgD_2	ACEE_10310	ACEE_10335	ACEE_10310	2,3-diketo-L-gulonate reductase; NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
dlgD_2	ACEE_10315	ACEE_10335	ACEE_10315	2,3-diketo-L-gulonate reductase; NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
dlgD_2	ACEE_10330	ACEE_10335	ACEE_10330	2,3-diketo-L-gulonate reductase; NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.	EbgC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
dlgD_2	siaT_4	ACEE_10335	ACEE_10320	2,3-diketo-L-gulonate reductase; NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
dlgD_2	xylB1_1	ACEE_10335	ACEE_10305	2,3-diketo-L-gulonate reductase; NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.	Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
dlgD_2	ydeN	ACEE_10335	ACEE_10340	2,3-diketo-L-gulonate reductase; NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
dlgD_2	yiaM	ACEE_10335	ACEE_10325	2,3-diketo-L-gulonate reductase; NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
siaT_4	ACEE_10310	ACEE_10320	ACEE_10310	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About