Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EXE25_01940 | EXE25_02595 | GCA_001485025_01206 | GCA_001485025_01331 | Unannotated protein. | Unannotated protein. | 0.945 |
EXE25_01940 | EXE25_09800 | GCA_001485025_01206 | GCA_001485025_01503 | Unannotated protein. | Unannotated protein. | 0.957 |
EXE25_01940 | ahcY | GCA_001485025_01206 | GCA_001485025_00133 | Unannotated protein. | Unannotated protein; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.928 |
EXE25_01940 | cysK | GCA_001485025_01206 | GCA_001485025_00721 | Unannotated protein. | Unannotated protein; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.974 |
EXE25_01940 | ilvA | GCA_001485025_01206 | GCA_001485025_02989 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.927 |
EXE25_01940 | metF | GCA_001485025_01206 | GCA_001485025_00134 | Unannotated protein. | Unannotated protein; Belongs to the methylenetetrahydrofolate reductase family. | 0.672 |
EXE25_01940 | metH | GCA_001485025_01206 | GCA_001485025_00328 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.974 |
EXE25_01940 | metZ | GCA_001485025_01206 | GCA_001485025_01683 | Unannotated protein. | Unannotated protein; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. | 0.939 |
EXE25_02595 | EXE25_01940 | GCA_001485025_01331 | GCA_001485025_01206 | Unannotated protein. | Unannotated protein. | 0.945 |
EXE25_02595 | EXE25_09800 | GCA_001485025_01331 | GCA_001485025_01503 | Unannotated protein. | Unannotated protein. | 0.969 |
EXE25_02595 | ahcY | GCA_001485025_01331 | GCA_001485025_00133 | Unannotated protein. | Unannotated protein; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.926 |
EXE25_02595 | cysK | GCA_001485025_01331 | GCA_001485025_00721 | Unannotated protein. | Unannotated protein; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.936 |
EXE25_02595 | ilvA | GCA_001485025_01331 | GCA_001485025_02989 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.915 |
EXE25_02595 | metH | GCA_001485025_01331 | GCA_001485025_00328 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.978 |
EXE25_02595 | metZ | GCA_001485025_01331 | GCA_001485025_01683 | Unannotated protein. | Unannotated protein; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. | 0.931 |
EXE25_04315 | ahcY | GCA_001485025_01937 | GCA_001485025_00133 | Unannotated protein. | Unannotated protein; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.925 |
EXE25_04315 | dcm | GCA_001485025_01937 | GCA_001485025_02527 | Unannotated protein. | Unannotated protein. | 0.859 |
EXE25_04315 | metH | GCA_001485025_01937 | GCA_001485025_00328 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.447 |
EXE25_09800 | EXE25_01940 | GCA_001485025_01503 | GCA_001485025_01206 | Unannotated protein. | Unannotated protein. | 0.957 |
EXE25_09800 | EXE25_02595 | GCA_001485025_01503 | GCA_001485025_01331 | Unannotated protein. | Unannotated protein. | 0.969 |
page 1 of 4