Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
F960_01776 | F960_04078 | GCA_000747725_01687 | GCA_000747725_03305 | Unannotated protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | Unannotated protein. | 0.954 |
F960_01776 | mltG | GCA_000747725_01687 | GCA_000747725_03986 | Unannotated protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | Unannotated protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.695 |
F960_01776 | murG | GCA_000747725_01687 | GCA_000747725_01850 | Unannotated protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | Unannotated protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.581 |
F960_02483 | F960_02484 | GCA_000747725_03991 | GCA_000747725_03990 | Unannotated protein. | Unannotated protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. | 0.999 |
F960_02483 | F960_02486 | GCA_000747725_03991 | GCA_000747725_03988 | Unannotated protein. | Unannotated protein. | 0.998 |
F960_02483 | F960_02487 | GCA_000747725_03991 | GCA_000747725_03987 | Unannotated protein. | Unannotated protein. | 0.636 |
F960_02483 | cysA | GCA_000747725_03991 | GCA_000747725_03992 | Unannotated protein. | Unannotated protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. | 0.999 |
F960_02483 | mltG | GCA_000747725_03991 | GCA_000747725_03986 | Unannotated protein. | Unannotated protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.636 |
F960_02483 | tmk | GCA_000747725_03991 | GCA_000747725_03985 | Unannotated protein. | Unannotated protein; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.636 |
F960_02484 | F960_02483 | GCA_000747725_03990 | GCA_000747725_03991 | Unannotated protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. | Unannotated protein. | 0.999 |
F960_02484 | F960_02486 | GCA_000747725_03990 | GCA_000747725_03988 | Unannotated protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. | Unannotated protein. | 0.998 |
F960_02484 | F960_02487 | GCA_000747725_03990 | GCA_000747725_03987 | Unannotated protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. | Unannotated protein. | 0.637 |
F960_02484 | cysA | GCA_000747725_03990 | GCA_000747725_03992 | Unannotated protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. | Unannotated protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. | 0.999 |
F960_02484 | mltG | GCA_000747725_03990 | GCA_000747725_03986 | Unannotated protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. | Unannotated protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.636 |
F960_02484 | tmk | GCA_000747725_03990 | GCA_000747725_03985 | Unannotated protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. | Unannotated protein; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.640 |
F960_02486 | F960_02483 | GCA_000747725_03988 | GCA_000747725_03991 | Unannotated protein. | Unannotated protein. | 0.998 |
F960_02486 | F960_02484 | GCA_000747725_03988 | GCA_000747725_03990 | Unannotated protein. | Unannotated protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. | 0.998 |
F960_02486 | F960_02487 | GCA_000747725_03988 | GCA_000747725_03987 | Unannotated protein. | Unannotated protein. | 0.729 |
F960_02486 | cysA | GCA_000747725_03988 | GCA_000747725_03992 | Unannotated protein. | Unannotated protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. | 0.998 |
F960_02486 | mltG | GCA_000747725_03988 | GCA_000747725_03986 | Unannotated protein. | Unannotated protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.729 |
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