STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmJUnannotated protein; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (279 aa)    
Predicted Functional Partners:
F990_03414
Unannotated protein.
       0.866
F990_03416
Unannotated protein.
       0.855
F990_03413
Unannotated protein.
       0.732
F990_03412
Unannotated protein.
       0.648
rlmE
Unannotated protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
  
   
 0.599
cysS
Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  0.490
F990_03417
Unannotated protein.
       0.471
bamD
Unannotated protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.468
rnhB
Unannotated protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
    0.468
rpoZ
Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.448
Your Current Organism:
Acinetobacter tjernbergiae
NCBI taxonomy Id: 202955
Other names: A. tjernbergiae, Acinetobacter tjernbergiae Carr et al. 2003, CIP 107465, DSM 14971, strain 7N16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.