STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0008KEGG: cce:Ccel_1068 protein tyrosine phosphatase. (100 aa)    
Predicted Functional Partners:
Cthe_0360
Thioredoxin; KEGG: cce:Ccel_2211 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; Belongs to the thioredoxin family.
  
 
 0.776
Cthe_1110
KEGG: amt:Amet_0983 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.
  
    0.740
Cthe_1946
PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Thioredoxin domain-containing protein; KEGG: chy:CHY_0560 thioredoxin/thioredoxin-disulfide reductase.
  
 
 0.735
Cthe_1111
KEGG: amt:Amet_0984 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter.
  
  
 0.645
Cthe_0135
PFAM: Acyl transferase; Beta-ketoacyl synthase; phosphopantetheine-binding; KR domain protein; KEGG: sus:Acid_3077 beta-ketoacyl synthase.
  
 
 0.609
Cthe_1112
KEGG: amt:Amet_1827 regulatory protein, ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
  
  
 0.591
Cthe_0009
PFAM: YD repeat-containing protein; KEGG: cbe:Cbei_4376 YD repeat-containing protein.
  
  
 0.585
Cthe_0010
KEGG: afl:Aflv_0562 hypothetical protein.
  
    0.519
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
   0.519
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
   0.503
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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