STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0207KEGG: cdl:CDR20291_0895 hypothetical protein. (277 aa)    
Predicted Functional Partners:
Cthe_0206
PFAM: UvrD/REP helicase; KEGG: dae:Dtox_3948 UvrD/REP helicase.
 
   0.977
Cthe_0205
KEGG: dae:Dtox_3947 hypothetical protein.
 
 
   0.968
Cthe_0208
KEGG: recJ; single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1.
 
    0.830
Cthe_1806
SMART: Ig domain protein group 2 domain protein; KEGG: cce:Ccel_1547 S-layer domain protein.
  
    0.638
Cthe_1911
KEGG: cce:Ccel_1656 carbohydrate binding family 6; PFAM: Carbohydrate binding family 6; S-layer domain-containing protein; SMART: cellulose binding type IV.
  
     0.601
Cthe_1235
KEGG: pjd:Pjdr2_1173 S-layer domain protein; PFAM: PKD domain containing protein; Fibronectin type III domain protein; Cna B domain protein; Hyalin; S-layer domain-containing protein; SMART: PKD domain containing protein; Fibronectin type III domain protein.
  
     0.552
Cthe_0313
PFAM: 37kDa nucleoid-associated protein; KEGG: aoe:Clos_1172 hypothetical protein.
  
     0.547
Cthe_0209
PFAM: glycosyl transferase family 2; KEGG: dth:DICTH_0207 glycosyltransferase.
  
    0.534
Cthe_0136
PFAM: 4'-phosphopantetheinyl transferase; KEGG: dps:DP0914 hypothetical protein; Belongs to the P-Pant transferase superfamily.
  
     0.485
Cthe_2879
PFAM: Dockerin type 1; KEGG: scl:sce4860 hypothetical protein.
  
    0.467
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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