STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0216PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cce:Ccel_1444 small acid-soluble spore protein alpha/beta type. (95 aa)    
Predicted Functional Partners:
Cthe_2130
PFAM: Protein of unknown function DUF2089; KEGG: cce:Ccel_0254 hypothetical protein.
  
     0.447
Cthe_0793
KEGG: cce:Ccel_0595 hypothetical protein.
  
    0.430
pgi
KEGG: cce:Ccel_1445 phosphoglucose isomerase (PGI); PFAM: phosphoglucose isomerase (PGI); Belongs to the GPI family.
  
    0.423
Cthe_0725
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; KEGG: drt:Dret_0887 response regulator receiver modulated metal dependent phosphohydrolase; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region.
  
     0.420
Cthe_2415
KEGG: cce:Ccel_0035 spore cortex-lytic enzyme; TIGRFAM: spore cortex-lytic enzyme; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding domain 1 protein.
  
    0.414
Cthe_0420
KEGG: cce:Ccel_1705 dipicolinate synthase subunit A.
  
  
 0.413
Cthe_2694
PFAM: O-antigen polymerase; KEGG: dae:Dtox_4116 O-antigen polymerase.
  
     0.402
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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