STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0253PFAM: ATPase associated with various cellular activities AAA_3; KEGG: mpd:MCP_1527 putative AAA ATPase. (329 aa)    
Predicted Functional Partners:
Cthe_0254
PFAM: protein of unknown function DUF58; KEGG: mpd:MCP_1526 hypothetical protein.
 
  
 0.891
Cthe_0251
PFAM: transglutaminase domain-containing protein; KEGG: afu:AF2400 hypothetical protein.
 
  
 0.780
Cthe_0252
KEGG: mpd:MCP_1528 hypothetical protein.
  
    0.776
Cthe_1056
KEGG: cce:Ccel_1711 transglutaminase domain protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein.
 
  
 0.759
Cthe_1181
KEGG: cce:Ccel_1711 transglutaminase domain protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein.
 
  
 0.753
Cthe_1055
PFAM: protein of unknown function DUF58; KEGG: cce:Ccel_1710 protein of unknown function DUF58.
 
  
 0.566
Cthe_0250
PFAM: protein of unknown function UPF0027; KEGG: aoe:Clos_1938 hypothetical protein.
       0.556
Cthe_0249
PFAM: peptidase C11 clostripain; KEGG: bld:BLi04029 hypothetical protein.
       0.481
Cthe_1918
PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ate:Athe_2050 Orn/Lys/Arg decarboxylase major region.
   
 
 0.465
Cthe_2108
PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: cce:Ccel_0155 Orn/Lys/Arg decarboxylase major region.
   
 
 0.451
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.