STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0280PFAM: Coat F domain protein; KEGG: hor:Hore_05380 coat F domain protein. (102 aa)    
Predicted Functional Partners:
Cthe_0279
KEGG: aoe:Clos_1643 hypothetical protein.
  
    0.817
Cthe_0281
Hypothetical protein; KEGG: dmo:Dmoj_GI22573 GI22573 gene product from transcript GI22573-RA.
  
    0.662
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
       0.606
Cthe_0278
PFAM: pseudouridine synthase; KEGG: aoe:Clos_0690 pseudouridine synthase.
  
    0.522
Cthe_0277
KEGG: cce:Ccel_2432 hypothetical protein.
  
    0.511
Cthe_1415
KEGG: cbi:CLJ_B3630 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
   
    0.408
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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