STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0429NADH dehydrogenase (quinone); KEGG: cbk:CLL_A2308 putative iron hydrogenase, electron-transfer subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding. (624 aa)    
Predicted Functional Partners:
Cthe_0428
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cpy:Cphy_0089 NADH dehydrogenase (ubiquinone) 24 kDa subunit.
 0.999
Cthe_0430
KEGG: cpy:Cphy_0087 hydrogenase, Fe-only; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; iron hydrogenase small subunit.
 
 0.999
Cthe_0338
KEGG: cce:Ccel_2236 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit.
 0.998
Cthe_0431
KEGG: emi:Emin_0753 hypothetical protein.
  
 0.997
Cthe_0342
TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; ferredoxin; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; KEGG: cce:Ccel_2232 hydrogenase, Fe-only; SMART: iron hydrogenase small subunit.
 
 0.994
Cthe_0425
KEGG: emi:Emin_0753 hypothetical protein.
  
 0.994
Cthe_0426
KEGG: emi:Emin_0752 putative PAS/PAC sensor protein; PFAM: Fe-S cluster domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.992
Cthe_3021
PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: cpy:Cphy_1733 ech hydrogenase, subunit EchD, putative.
  
 0.991
Cthe_3024
PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: cpy:Cphy_1730 NADH dehydrogenase (quinone).
  
 
 0.987
Cthe_0335
PFAM: Fe-S cluster domain protein; hydrogenase large subunit domain protein; KEGG: Fe-S cluster domain protein.
  
 
0.979
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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