STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0539KEGG: cpy:Cphy_2078 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (227 aa)    
Predicted Functional Partners:
Cthe_1761
PFAM: protein of unknown function DUF214; KEGG: cce:Ccel_0469 protein of unknown function DUF214.
 
 0.986
Cthe_0540
PFAM: protein of unknown function DUF214; KEGG: cpy:Cphy_2079 hypothetical protein.
 
 
 0.983
Cthe_3172
PFAM: protein of unknown function DUF214; KEGG: swo:Swol_0943 ABC transporter component-like protein.
 
 0.925
Cthe_0534
TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter transmembrane region; peptidase C39 bacteriocin processing; ABC transporter related; KEGG: amt:Amet_1032 ABC-type bacteriocin transporter; SMART: AAA ATPase.
   
0.901
Cthe_2964
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0047 binding-protein-dependent transport systems inner membrane component.
 
 
  
 0.893
Cthe_0538
KEGG: cpy:Cphy_2077 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
  
 0.892
Cthe_2279
KEGG: ere:EUBREC_1489 amino acid ABC transporter, permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
  
 0.855
Cthe_0537
Two component transcriptional regulator, winged helix family; KEGG: cpy:Cphy_2076 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein.
  
 0.790
Cthe_0397
KEGG: cpy:Cphy_2429 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
  
0.756
Cthe_2111
PFAM: protein of unknown function DUF214; KEGG: aoe:Clos_0981 hypothetical protein.
 
 
 0.731
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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