STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0564PFAM: Polyprenyl synthetase; KEGG: cce:Ccel_1526 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. (318 aa)    
Predicted Functional Partners:
Cthe_0563
PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cce:Ccel_1525 heptaprenyl diphosphate synthase component I.
 
 
 0.986
Cthe_1001
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.944
Cthe_0831
PFAM: Polyprenyl synthetase; KEGG: cce:Ccel_1902 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
0.916
Cthe_0560
PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; TQO small subunit DoxD domain-containing protein; KEGG: tte:TTE2486 NADH dehydrogenase, FAD-containing subunit.
 
  
 0.836
Cthe_3041
PFAM: UbiA prenyltransferase; KEGG: gym:GYMC10_2196 UbiA prenyltransferase.
 
   
 0.832
Cthe_0562
PFAM: protein of unknown function DUF1312; KEGG: protein of unknown function DUF1312.
 
    0.758
Cthe_0561
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
  
 0.713
Cthe_0135
PFAM: Acyl transferase; Beta-ketoacyl synthase; phosphopantetheine-binding; KR domain protein; KEGG: sus:Acid_3077 beta-ketoacyl synthase.
  
 
 0.646
rnj
RNA-metabolising metallo-beta-lactamase; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
  
    0.624
Cthe_0565
KEGG: cno:NT01CX_1363 hypothetical protein.
  
  
 0.615
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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