STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0744KEGG: cpy:Cphy_1188 peptidase S41; PFAM: copper amine oxidase-like domain-containing protein; peptidase S41; SMART: peptidase S41. (950 aa)    
Predicted Functional Partners:
Cthe_0998
TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: cce:Ccel_0450 membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF domain protein.
 
  
 0.494
Cthe_0287
Multi-sensor hybrid histidine kinase; KEGG: cvi:CV_1579 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; GAF domain protein.
 
  
 0.489
Cthe_0743
MATE efflux family protein; KEGG: ere:EUBREC_0466 hypothetical protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE.
     
 0.472
Cthe_1760
TIGRFAM: penicillin-binding protein, 1A family; KEGG: cce:Ccel_2876 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
  
   
 0.419
Cthe_2680
Peptidase S41; KEGG: cpy:Cphy_1188 peptidase S41; PFAM: peptidase S41; Tetratricopeptide TPR_1 repeat-containing protein; SMART: peptidase S41; Tetratricopeptide repeat.
 
 
0.411
Cthe_0745
PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; Dockerin type 1; KEGG: cce:Ccel_0731 glycoside hydrolase family 9; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
  
    0.410
Cthe_3120
KEGG: cbl:CLK_0631 pyruvate ferredoxin oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein.
    
   0.410
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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