STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0780KEGG: dth:DICTH_0356 phosphorylated carbohydrates phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase. (227 aa)    
Predicted Functional Partners:
Cthe_0781
PFAM: GCN5-related N-acetyltransferase; KEGG: dhd:Dhaf_2153 GCN5-related N-acetyltransferase.
  
  
 0.618
Cthe_0779
PFAM: copper amine oxidase-like domain-containing protein; SCP-like extracellular; KEGG: aoe:Clos_0300 copper amine oxidase domain-containing protein.
  
    0.564
Cthe_0261
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: bfs:BF0931 putative haloacid dehalogenase-like hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase.
 
  
 0.485
Cthe_0135
PFAM: Acyl transferase; Beta-ketoacyl synthase; phosphopantetheine-binding; KR domain protein; KEGG: sus:Acid_3077 beta-ketoacyl synthase.
  
 
 0.445
Cthe_2822
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_3898 oxidoreductase domain-containing protein.
 
  
 0.430
Cthe_0795
KEGG: tte:TTE1825 glycosidases; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.425
Cthe_1265
PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: cce:Ccel_1417 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I.
   
 
 0.402
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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