STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0858UPF0365 protein Cthe_0858; KEGG: hypothetical protein (329 aa)    
Predicted Functional Partners:
Cthe_0857
PFAM: protein of unknown function DUF107; KEGG: cbe:Cbei_1483 hypothetical protein
 
   
 0.946
Cthe_2693
KEGG: sth:STH1099 hypothetical protein
      
 0.733
Cthe_2709
KEGG: cce:Ccel_0298 hypothetical protein
      
 0.733
Cthe_0859
KEGG: dhd:Dhaf_2898 hypothetical protein
       0.665
Cthe_0016
Ferritin; Iron-storage protein
      
 0.580
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction
      
 0.580
Cthe_1104
KEGG: dae:Dtox_3248 hypothetical protein
      
 0.580
Cthe_2348
PFAM: Ig domain protein; S-layer domain-containing protein; KEGG: cce:Ccel_3398 hypothetical protein
      
 0.580
Cthe_1869
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
      
 0.567
Cthe_1556
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shi:Shel_25820 ABC-type metal ion transport system, permease component
      
 0.564
Your Current Organism:
Ruminiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, R. thermocellum ATCC 27405, Ruminiclostridium thermocellum, Ruminiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC27405
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