STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0858KEGG: hypothetical protein. (329 aa)    
Predicted Functional Partners:
Cthe_0857
PFAM: protein of unknown function DUF107; KEGG: cbe:Cbei_1483 hypothetical protein.
 
  
 0.984
Cthe_2693
KEGG: sth:STH1099 hypothetical protein.
      
 0.733
Cthe_2709
KEGG: cce:Ccel_0298 hypothetical protein.
      
 0.733
Cthe_0859
KEGG: dhd:Dhaf_2898 hypothetical protein.
  
    0.663
atpD
V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
  
 0.542
Cthe_2348
PFAM: Ig domain protein; S-layer domain-containing protein; KEGG: cce:Ccel_3398 hypothetical protein.
   
  
 0.540
atpD-2
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
     
 0.539
Cthe_0016
Ferritin Dps family protein; Iron-storage protein.
   
  
 0.533
Cthe_2261
KEGG: tit:Thit_2339 hypothetical protein.
   
  
 0.532
atpA
H+transporting two-sector ATPase alpha/beta subunit central region; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
   
  
 0.531
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.