STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0870PFAM: NADPH-dependent FMN reductase; KEGG: cce:Ccel_0549 NADPH-dependent FMN reductase. (195 aa)    
Predicted Functional Partners:
Cthe_3163
PFAM: Carbohydrate binding family 25; KEGG: cce:Ccel_2169 carbohydrate-binding family 25 protein.
  
    0.600
Cthe_1080
KEGG: hmo:HM1_2795 hypothetical protein.
  
     0.598
trpF
KEGG: phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); Belongs to the TrpF family.
  
    0.548
trpC
KEGG: amt:Amet_1080 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
  
    0.546
Cthe_0869
KEGG: cce:Ccel_0551 hypothetical protein.
 
    0.539
Cthe_3040
PFAM: Protein of unknown function DUF2383; KEGG: aoe:Clos_1705 hypothetical protein.
  
  
 0.504
Cthe_0867
KEGG: cce:Ccel_0553 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
    0.466
Cthe_2489
KEGG: cbo:CBO1738 phage protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
   
  
 0.461
Cthe_1205
KEGG: cce:Ccel_0489 putative serine protein kinase, PrkA; PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein.
   
    0.440
Cthe_0868
PFAM: type IV pilus assembly PilZ; KEGG: pcb:PC000378.02.0 hypothetical protein.
  
    0.427
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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