STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1016KEGG: cce:Ccel_1350 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; copper amine oxidase-like domain-containing protein; SMART: cell wall hydrolase/autolysin. (352 aa)    
Predicted Functional Partners:
Cthe_1048
KEGG: cce:Ccel_1860 rhomboid family protein; PFAM: Rhomboid family protein; SMART: Tetratricopeptide repeat.
  
   0.549
Cthe_1807
KEGG: gka:GK1403 hypothetical protein.
    
   0.527
Cthe_1702
Cell wall hydrolase/autolysin; KEGG: cby:CLM_2289 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; Sporulation domain-containing protein; SMART: cell wall hydrolase/autolysin.
  
 
0.519
Cthe_1017
KEGG: cce:Ccel_1467 hypothetical protein.
  
    0.487
cinA
KEGG: cce:Ccel_0674 competence/damage-inducible protein CinA; TIGRFAM: competence/damage-inducible protein CinA; molybdenum cofactor synthesis domain protein; PFAM: CinA domain protein; molybdopterin binding domain.
 
   
 0.472
Cthe_1913
KEGG: hor:Hore_08350 hypothetical protein.
  
   0.450
Cthe_0259
PFAM: Rhomboid family protein; KEGG: aoe:Clos_1948 rhomboid family protein.
  
   0.445
Cthe_3042
KEGG: hor:Hore_08350 hypothetical protein.
  
   0.445
murA-2
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
  
 0.443
Cthe_2146
PFAM: copper amine oxidase-like domain-containing protein; KEGG: dae:Dtox_4298 copper amine oxidase domain protein.
 
   
0.438
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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