STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1017KEGG: cce:Ccel_1467 hypothetical protein. (100 aa)    
Predicted Functional Partners:
Cthe_1016
KEGG: cce:Ccel_1350 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; copper amine oxidase-like domain-containing protein; SMART: cell wall hydrolase/autolysin.
  
    0.487
Cthe_1018
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ttj:TTHB086 sugar ABC transporter, permease protein.
  
    0.426
Cthe_1019
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tth:TT_P0040 putative transmembrane sugar transport protein.
  
    0.417
Cthe_0749
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cce:Ccel_0890 binding-protein-dependent transport systems inner membrane component.
   
    0.408
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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