STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1047KEGG: pkn:PKH_021530 hypothetical protein. (181 aa)    
Predicted Functional Partners:
Cthe_1048
KEGG: cce:Ccel_1860 rhomboid family protein; PFAM: Rhomboid family protein; SMART: Tetratricopeptide repeat.
  
    0.427
Cthe_1046
PFAM: extracellular solute-binding protein family 1; KEGG: gym:GYMC10_3306 extracellular solute-binding protein family 1.
       0.410
Cthe_1106
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: tte:TTE1263 pili biogenesis protein PilT-like ATPase; SMART: AAA ATPase.
   
    0.404
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.