STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1060PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: cce:Ccel_1681 AIR synthase related protein domain protein. (327 aa)    
Predicted Functional Partners:
Cthe_3014
KEGG: cpy:Cphy_1740 hydrogenase formation HypD protein; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein.
 
 
 0.979
Cthe_3016
KEGG: cpy:Cphy_1738 (NiFe) hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase.
 
 
 0.962
Cthe_3015
KEGG: cpy:Cphy_1739 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC).
  
 
 0.918
Cthe_3010
KEGG: csc:Csac_2173 hypothetical protein.
  
 
 0.825
Cthe_0554
TIGRFAM: phosphoribosylformylglycinamidine synthase; KEGG: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein.
   
 
 0.653
Cthe_3120
KEGG: cbl:CLK_0631 pyruvate ferredoxin oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein.
 
   
 0.593
Cthe_2219
PFAM: flagellar protein FlaG protein; KEGG: cce:Ccel_0104 flagellar protein FlaG protein.
  
 
   0.551
Cthe_1061
PFAM: Protein of unknown function DUF2225; KEGG: cce:Ccel_1682 hypothetical protein.
       0.519
Cthe_1062
PFAM: VanW family protein; G5 domain protein; KEGG: tte:TTE1768 hypothetical protein.
  
    0.495
Cthe_0466
KEGG: cce:Ccel_2050 flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; MgtE intracellular region.
    
   0.487
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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