STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1074Delta-lactam-biosynthetic de-N-acetylase; KEGG: cce:Ccel_0571 polysaccharide deacetylase; TIGRFAM: delta-lactam-biosynthetic de-N-acetylase; PFAM: polysaccharide deacetylase. (320 aa)    
Predicted Functional Partners:
Cthe_1903
PFAM: polysaccharide deacetylase; KEGG: cpy:Cphy_0405 polysaccharide deacetylase.
  
     0.773
Cthe_1073
KEGG: cce:Ccel_0572 sporulation protein YqfC.
  
  
 0.738
Cthe_1072
KEGG: cce:Ccel_0573 sporulation protein YqfD; TIGRFAM: sporulation protein YqfD; PFAM: stage IV sporulation YqfD.
 
  
 0.618
Cthe_1071
PFAM: PhoH family protein; KEGG: cce:Ccel_0574 PhoH family protein.
       0.526
Cthe_1788
PFAM: glycosyl transferase family 2; KEGG: cce:Ccel_0333 glycosyl transferase family 2.
  
  
 0.511
Cthe_2341
PFAM: glycosyl transferase family 2; KEGG: apr:Apre_0245 glycosyl transferase family 2.
  
  
 0.507
Cthe_1070
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase 7TM intracellular region; metal-dependent phosphohydrolase HD sub domain; KEGG: cce:Ccel_0575 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.
       0.433
Cthe_1076
PFAM: protein of unknown function DUF881; KEGG: cce:Ccel_0569 protein of unknown function DUF881.
       0.433
Cthe_1075
PFAM: protein of unknown function DUF881; KEGG: cce:Ccel_0570 protein of unknown function DUF881.
       0.429
Cthe_3006
ErfK/YbiS/YcfS/YnhG family protein; KEGG: aoe:Clos_1944 peptidoglycan-binding LysM; PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
 
  
 0.417
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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